Prof. Michael Sattler (HMGU), Dr. Wolfgang Jahnke (NOVA), Dr. Matteo Gentili (GIO), Dr. Grzegorz Popowicz (HMGU)
Structural biology and detection of conformational dynamics and transient pockets in protein targets.
About the project:
The aim of my PhD project is to develop techniques for drug discovery using NMR and to make steps towards finding potential leads for development of drugs. My targets will mainly be PEX proteins in T. cruzi, a pathogen responsible for Chagas disease, which is a neglected disease found predominantly in South America. This involves structure determination by NMR, fragment-based drug discovery and work with paramagnetic tags.
I will be using and improving methods to determine/validate the structure of proteins by analysing interatomic (and hopefully intermolecular) interactions from different NMR spectra. I will then screen small fragments using 2D NMR spectra that show specific atom pairs in a molecule, eg hydrogen-nitrogen or hydrogen-carbon, and 1D spectra that show a specific type of atom, eg Fluorine. These fragments can be combined/grown into complete molecules that fit interesting regions of these proteins. These regions usually help interactions with other molecules in a cell or are relevant in the pathogen’s life cycle, so that disruption causes death, a loss of contagiousness or failure to reproduce.
Having grown up in central England and studied in Cambridge, I have now moved to Munich, Germany to carry out my PhD in drug discovery. I love travelling and languages and spend my free time in the mountains, including a lake or river swim in the summer if I can!
ETH Zurich (two months), Novartis GmbH (four months)
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Institut für Strukturbiologie
Helmholtz Zentrum München
Deutsches Forschungszentrum für Gesundheit und Umwelt (GmbH)
Ingolstädter Landstr. 1